ACE - Example Inputs and Outputs

• sample.config (1.3 KB) - configuration file for ACE
  
• gencode.gtf.gz  (16 MB) - reference annotations from GENCODE v19
  
• VCF files from the 1000 Genomes Project (directory)
  
• hg19.2bit (778 MB) - 2bit genome file from UCSC
  

• ref.fasta.gz (488 MB) - reference sequence file (genic regions of GRCh37/hg19)
  
• HG00096-1.fasta.gz (516 MB) - sequence file for haplotype 1 of individual HG00096
• HG00096-2.fasta.gz (496 MB) - sequence file for haplotype 2 of individual HG00096
• HG00096-1.essex.gz (33 MB) - annotations for haplotype 1 of individual HG00096, in Essex format
• HG00096-2.essex.gz (32 MB) - annotations for haplotype 2 of individual HG00096, in Essex format
• HG00096-1.xml.gz (36 MB) - annotations for haplotype 1 of individual HG00096, in XML format
• HG00096-2.xml.gz (35 MB) - annotations for haplotype 2 of individual HG00096, in XML format